Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015910518.1_cds_XP_016460573.1_53984
CDS Infomation

[gene=LOC107784033] [db_xref=GeneID:107784033] [protein=cyclic nucleotide-gated ion channel 4-like] [protein_id=XP_016460573.1] [location=complement(join(45874..46389,46559..46645,47211..47447,47542..47650,47780..48093,49620..49835,52071..52610))] [gbkey=CDS]
Sequence

ATGGCTACTCATAATCTTGAACTTGAACTATCACATAATTACAGTGACAGTAATGATGAT
GACGAGGATGAGGAGCAAGACATCGATGAAGAAATAGAAGTGGAGGGAAAAGAAGAAAAT
AATTCTAATGAGTACAACAACAATTGCGGAGTTTGTAGTGGTCGTGGTCGTGGTCGAGGA
GGACTGGCAGGCTTTTTCTCCGGGAAAGTTATAGACCCGAGAGCGCCTTGGGTTCAAGAA
TGGAACAGAATATTCTTACTAGTATGTGCCACTGGACTTTTTGTGGATCCACTATTTTTC
TATGCTCTTTCTATTAGTGAGAATTGTATTTGCCTCTTCATCGACGGGTGGTTCGCCGTC
ACGGTCACGGCTCTCCGGTGCATGACTGATGCCTTGCATTTATGGAACATGTGGCTACAA
TTCAGAATGAACAAATTACGTCCTCATGATAAGAATCCTCCACGTTCTGTGGCTTTACGA
TATTTGAAGGCTAAAAAAGGGTTCTTTTTTGATCTATTTGTCATCCTTCCTTTGCCGCAG
ATAGTGATGTGGGTAGCGATTCCAGATCTACTGGAGAAAGGATCTATAACAACAGTGATG
ACAGTGTTGTTAATAATGTTTCTGTTTCAGTACCTGCCCAAAATCTATCACTCCGTTTGC
CTATTGCGGCGGATGCAAGGTCTCTCCGGCTACATATTTGGCACTGTTTGGTGGGGAATT
GCTCTCAACTTGATCGCCTATTTTGTCGCTTCCCACGCTGTGGGAGCATGTTGGTACTTG
CTAGGAATCCAAAGGGCTGCGAAATGTTTGAAACAACAGTGTGAAATTACAAAAGGTTGT
GGCCTCAGAATGTTGGCCTGCGAAGAGTCAATATATTATGGAACAACTACTCTGGTGAAG
CACAAAAGTCGACTCATATGGGGTGAGACCAAACTTGCTAGATCGACGTGCCTATCCTCT
GAAGAAAGTTTTGACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGAAAAT
CGTCTTGAGAAAATACTCTTTCCCATTTTCTGGGGTCTCATGACTCTCAGTACTTTTGGC
AACCTGGAGAGCACAACAGATTGGCTAGAATTAGTATTCATAATCATCGTTCTTACTAGT
GGGCTACTTCTGGTCACCATGTTGATTGGTAACATCAAGGTTTTCTTGCATGCAACGACA
TCAAAGAAACAGGCAATGCAACTTAAGATGAGAAATGTAGAGTGGTGGATGAGGAGGAGA
AGATTGCCACAGGATTACAAGCAAAGAGTGAGAAACTATGAACGGCAAAGATATGCAGCA
ACGCGTGGAGTTGATGAATGCGAAATGATACATAACCTTCCTGAGGGTCTTAGAAGGGAC
ATCAAATACCATCTTTGTTTGGACTTGGTCAGACAGGTTCCTCTATTTCAGCATATGGAT
AATTTGGTCCTGGAGAACATATGTGATCGCGTGAAATCCCTGATTTTTACAAAAGGAGAA
ACAATAACTAGAGAGGGCGATCCAGTTCAGAGAATGTTATTCATAGTGAGAGGCCATCTC
CAAAGTAGTCAAGTACTTCGAGACGGTGTAAAAAGTTGCTGCATGTTAGGTCCCGGAAAC
TTCAGCGGCGACGAACTTCTTTCATGGTGCCTCCGACGACCCTTCGTGGAGCGACTGCCG
CCATCCTCATCATCATTAGTGACTCTTGAAACCACTGAAGCCTTTGGTCTTGAAGCTGAC
GATGTAAAGTATGTAACACAACATTTTCGGTACACATTTGTGGACGAAAAAGTCAAGAGA
AGTGCTAGATATTATTCTCCAGGATGGAGAACTTGGGCAGCAGTTGCTATTCAATTGGCT
TGGAGGAGATATAAACACAGGTTGACACTCACCTCGTTGTCGTTTATTAGACCAAGAAGA
CCATTATCTCGATGTTCTTCACTAACGGAGGACAGACTCAAGCTTTATACGGCTTTGCTT
ACTTCGCCAAAGCCTAATCAGGATGATTTTGATTTTTAA

Peptide Sequence

PEP ID

XP_016460573.1
PEP Infomation

PREDICTED: cyclic nucleotide-gated ion channel 4-like [Nicotiana tabacum]
Sequence

MATHNLELELSHNYSDSNDDDEDEEQDIDEEIEVEGKEENNSNEYNNNCGVCSGRGRGRG
GLAGFFSGKVIDPRAPWVQEWNRIFLLVCATGLFVDPLFFYALSISENCICLFIDGWFAV
TVTALRCMTDALHLWNMWLQFRMNKLRPHDKNPPRSVALRYLKAKKGFFFDLFVILPLPQ
IVMWVAIPDLLEKGSITTVMTVLLIMFLFQYLPKIYHSVCLLRRMQGLSGYIFGTVWWGI
ALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCEITKGCGLRMLACEESIYYGTTTLVK
HKSRLIWGETKLARSTCLSSEESFDYGAYKWTVQLVTNENRLEKILFPIFWGLMTLSTFG
NLESTTDWLELVFIIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMRRR
RLPQDYKQRVRNYERQRYAATRGVDECEMIHNLPEGLRRDIKYHLCLDLVRQVPLFQHMD
NLVLENICDRVKSLIFTKGETITREGDPVQRMLFIVRGHLQSSQVLRDGVKSCCMLGPGN
FSGDELLSWCLRRPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVDEKVKR
SARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLTEDRLKLYTALL
TSPKPNQDDFDF

Transcript Sequence

Gene sequence data has not been registered.